Yeah, it's happened to me a few times. I've had clients ring me in complete horror and panic - Google says we have a health warning. Take two paracetamol and call me in the morning!
I reckon it will go away if you tell google to remove the content in those URL's - not sure if thats feasible as it can be time consuming but you might be better using a redirect for the whole sub folder than blocking it in Robots and getting the "yellow card" so to speak.
Once Google dumps the URL's from its cache, the warning stops but URL's can stay cached for 12 months...



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